karyotapR-package	karyotapR-package
.TapestriExperiment	TapestriExperiment-class
assayBoxPlot	assayBoxPlot
assayHeatmap	assayHeatmap
barcodeProbe	slotGettersSetters
barcodeProbe,TapestriExperiment-method	slotGettersSetters
barcodeProbe<-	slotGettersSetters
barcodeProbe<-,TapestriExperiment-method	slotGettersSetters
calcCopyNumber	calcCopyNumber
calcGMMCopyNumber	calcGMMCopyNumber
calcNormCounts	calcNormCounts
calcSmoothCopyNumber	calcSmoothCopyNumber
callSampleLables	callSampleLables
corner	corner
countBarcodedReads	countBarcodedReads
countBarcodedReadsFromContig	countBarcodedReads
createTapestriExperiment	createTapestriExperiment
Custom Slot Getters and Setters	slotGettersSetters
generateControlCopyNumberTemplate	calcCopyNumber
getChrOrder	getChrOrder
getCytobands	getCytobands
getGMMBoundaries	getGMMBoundaries
getTidyData	getTidyData
gmmParams	slotGettersSetters
gmmParams,TapestriExperiment-method	slotGettersSetters
grnaProbe	slotGettersSetters
grnaProbe,TapestriExperiment-method	slotGettersSetters
grnaProbe<-	slotGettersSetters
grnaProbe<-,TapestriExperiment-method	slotGettersSetters
karyotapR	karyotapR-package
moveNonGenomeProbes	moveNonGenomeProbes
newTapestriExperimentExample	newTapestriExperimentExample
PCAKneePlot	PCAKneePlot
plotCopyNumberGMM	plotCopyNumberGMM
reducedDimPlot	reducedDimPlot
runClustering	runClustering
runPCA	runPCA
runUMAP	runUMAP
show,TapestriExperiment-method	TapestriExperiment-class
TapestriExperiment-class	TapestriExperiment-class
